work/3574108882_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108882_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108882_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108882_sv1	33853668	42239	0.001248	25684394	0.241311	12817486	0.761579	0.236777	0.878739	0.121261	214	323	482	12484012	0.973983	10970189	1513823	19560691	6081464	353.8737	126.102913	8169274	0.979608	0.946043	0.946043	5071714350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	192930	0.13221	0.0	0.159116	0.194265	0.252457	0.364943	0.875017	1.218958	1.027646	0.905691	0.995116	0.984244	0.955892	1.096042	1.01937	0.899714	0.591056	0.301665	0.376684	0.0	0.0	0.0	273.969115	0.319756	1513.0	74.0	107.0	276.0	449.0	515.0	0.037031	0.998218	6344792	6130708	1.00	0.962969	6366463	0.002	657	-931.6932	11.2497	6388832

2 rows