work/3574108884_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108884_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108884_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108884_sv1	37894364	60769	0.001604	28307292	0.252995	14119149	0.756347	0.241506	0.875517	0.124483	211	324	488	13712194	0.971177	12005263	1706931	21410140	6836383	355.881377	129.776932	9587072	0.979302	0.945582	0.945582	5675039250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211592	0.162169	0.0	0.146823	0.19602	0.265473	0.363395	0.859546	1.199882	1.019104	0.903901	1.005744	0.999254	0.968904	1.106532	1.025143	0.9001	0.603958	0.275398	0.371621	0.0	0.0	0.0	299.02917	0.320926	1657.0	81.0	117.0	301.0	497.0	568.0	0.025187	0.998756	6347060	6206111	1.00	0.974813	6366463	0.0181	679	-3014.785	508.0053	6388832

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