work/3574108887_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108887_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108887_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108887_sv1	31697890	46275	0.00146	24525391	0.226277	12235384	0.758255	0.239858	0.875287	0.124713	204	314	476	11882864	0.971188	10400913	1481951	18596497	5882619	346.281457	127.611786	7172499	0.977652	0.942172	0.942172	4747742250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	193362	0.106965	0.0	0.105486	0.129981	0.235221	0.350822	0.816902	1.154521	0.979553	0.90852	1.019763	1.041949	1.012793	1.147808	1.067295	0.907607	0.624167	0.31167	0.372652	0.0	0.0	0.0	256.757566	0.353339	1254.0	59.0	93.0	253.0	448.0	513.0	0.060926	0.999623	6363703	5978578	1.00	0.939074	6366463	0.0057	643	-1395.118	67.1267	6388832

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