work/3574108889_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108889_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108889_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108889_sv1	29948950	43406	0.001449	23112803	0.22826	11530576	0.755337	0.242785	0.878422	0.121578	213	323	487	11177727	0.969399	9818766	1358961	17457965	5611432	355.511933	128.90062	6836147	0.977613	0.941581	0.941581	4485831600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	182006	0.087238	0.0	0.114925	0.130676	0.239197	0.344165	0.824658	1.160823	0.985172	0.90681	1.018833	1.04017	1.008393	1.135012	1.065124	0.892979	0.607257	0.315072	0.422087	0.0	0.0	0.0	243.337088	0.354935	1163.0	55.0	88.0	240.0	423.0	481.0	0.072804	0.9995	6362228	5902961	1.00	0.927196	6366463	0.0034	570	-892.1451	26.4886	6388832

2 rows