work/3574108891_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108891_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108891_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108891_sv1	30889864	44420	0.001438	24036262	0.221872	11991785	0.748721	0.249431	0.878582	0.121418	234	339	496	11660185	0.972348	10244427	1415758	17996464	5995378	370.629122	124.351593	6853602	0.978208	0.942492	0.942492	4626816600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	190161	0.096122	0.0	0.128844	0.138126	0.237739	0.351709	0.835012	1.173575	0.986785	0.90295	1.013645	1.029857	1.000606	1.136922	1.064066	0.909526	0.614231	0.32021	0.400847	0.0	0.0	0.0	256.639718	0.360693	1395.0	57.0	90.0	253.0	447.0	513.0	0.067835	0.998914	6362850	5934593	1.00	0.932165	6366463	0.0039	604	-967.4698	39.5633	6388832

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