work/3574108894_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108894_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108894_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108894_sv1	34015174	48294	0.00142	27180957	0.200917	13562357	0.776496	0.221727	0.878238	0.121762	198	292	435	13268870	0.97836	11653228	1615642	21105902	6026761	322.784717	113.936012	6834217	0.979398	0.946748	0.946748	5095032000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	214415	0.085019	0.0	0.115053	0.135633	0.218774	0.360425	0.8546	1.198504	0.999811	0.912	1.007427	1.004785	0.970348	1.112983	1.058295	0.941898	0.625746	0.314202	0.395525	0.0	0.0	0.0	291.495083	0.341127	1616.0	71.0	111.0	290.0	493.0	558.0	0.035782	0.998425	6365291	6138656	1.00	0.964218	6366463	0.0148	697	-2833.3845	373.8429	6388832

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