work/3574108901_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108901_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108901_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108901_sv1	29417662	41220	0.001401	22833065	0.223831	11391860	0.758186	0.240008	0.876535	0.123466	214	319	476	11097772	0.974184	9727580	1370192	17311718	5480127	350.496749	124.429276	6584597	0.978657	0.944056	0.944056	4406466300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	170108	0.121323	0.0	0.146017	0.186155	0.252968	0.365403	0.862875	1.19925	1.017448	0.903461	1.003691	0.99881	0.966878	1.112036	1.03307	0.913824	0.602645	0.306758	0.32639	0.0	0.0	0.0	241.060165	0.312187	1160.0	69.0	98.0	242.0	395.0	452.0	0.052648	0.999287	6345870	6031279	1.00	0.947352	6366463	0.0107	617	-1640.7127	175.5064	6388832

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