work/3574108902_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108902_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108902_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108902_sv1	34627480	48328	0.001396	27108901	0.217128	13526025	0.754663	0.243555	0.876427	0.123573	221	326	482	13169480	0.97364	11542089	1627391	20458071	6602502	357.128705	123.801537	7518579	0.978729	0.944017	0.944017	5186872800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	201675	0.189926	0.0	0.178968	0.229681	0.277392	0.386054	0.874768	1.211079	1.02351	0.903398	0.996172	0.991041	0.956082	1.102638	1.029005	0.907228	0.603572	0.285802	0.368894	0.0	0.0	0.0	288.589271	0.31328	1695.0	82.0	116.0	291.0	472.0	538.0	0.025002	0.998694	6347000	6207289	1.00	0.974998	6366463	0.0081	711	-1822.7427	150.8959	6388832

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