work/3574108906_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108906_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108906_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108906_sv1	37200564	47545	0.001278	28754613	0.227038	14349684	0.764293	0.234053	0.876415	0.123585	205	311	466	14024048	0.977307	12290890	1733158	21976962	6730106	341.484049	123.548637	8445951	0.979691	0.946796	0.946796	5572952850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	213607	0.164511	0.0	0.176475	0.219041	0.252512	0.384083	0.892715	1.230458	1.031298	0.903666	0.99335	0.975832	0.940301	1.086699	1.016773	0.917462	0.594744	0.301308	0.333294	0.0	0.0	0.0	304.818906	0.303745	1489.0	90.0	128.0	308.0	491.0	559.0	0.015445	0.998646	6346626	6268131	1.00	0.984555	6366463	0.0053	606	-1480.3844	63.6125	6388832

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