work/3574108909_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108909_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108909_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108909_sv1	35663412	65148	0.001827	27677313	0.22393	13801518	0.756591	0.241055	0.875572	0.124428	209	316	475	13386004	0.969894	11720410	1665594	20940418	6671747	347.761216	125.415283	7986099	0.977757	0.942167	0.942167	5339739600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	203651	0.154877	0.0	0.144318	0.209978	0.270202	0.371438	0.862499	1.19139	1.016039	0.903445	1.003364	1.003575	0.971581	1.113325	1.038874	0.912293	0.605924	0.299823	0.348474	0.0	0.0	0.0	291.12828	0.310296	1547.0	84.0	120.0	293.0	476.0	543.0	0.021685	0.998286	6345552	6228404	1.00	0.978315	6366463	0.0161	641	-2616.5194	402.0095	6388832

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