work/3574108910_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108910_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108910_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108910_sv1	39172834	56255	0.001436	29785400	0.239641	14860095	0.747988	0.250124	0.877508	0.122492	232	335	491	14382381	0.967853	12620649	1761732	22279109	7450036	366.479075	123.230453	9387434	0.977552	0.940901	0.940901	5867486850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	220648	0.170254	0.0	0.17186	0.208802	0.27519	0.382698	0.879465	1.206304	1.02047	0.90389	1.00199	0.997516	0.960593	1.093184	1.024728	0.888882	0.595799	0.30173	0.379056	0.0	0.0	0.0	318.023038	0.317103	1766.0	89.0	126.0	321.0	523.0	591.0	0.017075	0.998498	6345297	6257753	1.00	0.982925	6366463	0.0058	544	-1258.3739	71.1066	6388832

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