work/3574108912_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108912_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108912_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108912_sv1	36165320	52427	0.00145	28155939	0.221466	14047452	0.758337	0.239801	0.874815	0.125185	210	315	470	13652417	0.971879	11943338	1709079	21351687	6751825	345.984332	123.245834	8009381	0.977852	0.94211	0.94211	5416933950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	221393	0.079828	0.0	0.098585	0.115699	0.227568	0.352391	0.840843	1.179191	0.987747	0.906636	1.010922	1.024782	0.994514	1.132776	1.061895	0.920132	0.615744	0.315947	0.371658	0.0	0.0	0.0	298.047125	0.349487	1668.0	70.0	110.0	295.0	510.0	583.0	0.036414	0.998168	6365090	6134632	1.00	0.963586	6366463	0.0049	608	-1344.3362	64.0972	6388832

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