work/3574108918_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108918_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108918_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108918_sv1	36447070	49871	0.001368	28707369	0.212355	14324969	0.770103	0.22816	0.877034	0.122966	201	303	454	14025041	0.979063	12300431	1724610	22107626	6549872	333.585022	120.540733	7739701	0.979355	0.946731	0.946731	5459579850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	214057	0.134922	0.0	0.141885	0.18052	0.244646	0.379349	0.881893	1.221101	1.025016	0.901457	0.994751	0.982287	0.948873	1.103165	1.027847	0.929529	0.611182	0.297574	0.33948	0.0	0.0	0.0	305.004384	0.304452	1213.0	89.0	128.0	308.0	496.0	563.0	0.016004	0.998349	6344954	6264574	1.00	0.983996	6366463	0.0025	588	-1015.6695	15.4494	6388832

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