work/3574108919_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108919_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108919_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108919_sv1	35404530	46613	0.001317	26919306	0.239665	13432528	0.755616	0.242653	0.875187	0.124813	218	322	476	13066416	0.972744	11435557	1630859	20340650	6532043	352.782935	121.983131	8485224	0.97859	0.943955	0.943955	5303687550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200382	0.165263	0.0	0.149714	0.209416	0.272945	0.375038	0.86565	1.198236	1.020804	0.907692	1.004826	0.997379	0.964296	1.107037	1.015993	0.893971	0.585919	0.288132	0.378506	0.0	0.0	0.0	286.214819	0.31243	1466.0	81.0	116.0	288.0	470.0	538.0	0.025442	0.999055	6345791	6204489	1.00	0.974558	6366463	0.0076	639	-1691.5606	123.0905	6388832

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