work/3574108920_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108920_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108920_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108920_sv1	32929020	45488	0.001381	25349301	0.230184	12647782	0.754903	0.243302	0.877049	0.122951	216	323	482	12272805	0.970352	10763856	1508949	19136270	6167543	355.059729	126.003418	7579719	0.978002	0.942271	0.942271	4932529800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	187487	0.185288	0.0	0.161472	0.230685	0.273023	0.373411	0.857684	1.194168	1.014226	0.9072	1.005493	1.004044	0.971179	1.10986	1.03271	0.896096	0.597551	0.285792	0.320087	0.0	0.0	0.0	268.359032	0.314308	1224.0	76.0	108.0	269.0	443.0	506.0	0.035097	0.999053	6345421	6143019	1.00	0.964903	6366463	0.0095	674	-1953.9345	159.7037	6388832

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