work/3574108930_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108930_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108930_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108930_sv1	31319638	46718	0.001492	24253662	0.225608	12099271	0.754184	0.24389	0.874238	0.125762	219	322	476	11771058	0.972873	10290712	1480346	18291723	5915221	353.527338	121.932632	7065976	0.978354	0.943326	0.943326	4690938000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	192019	0.087308	0.0	0.109008	0.129351	0.2251	0.348734	0.832279	1.165234	0.987233	0.909073	1.017835	1.028979	1.003412	1.13483	1.064505	0.903448	0.611092	0.316355	0.417866	0.0	0.0	0.0	257.854708	0.355362	1204.0	59.0	93.0	254.0	449.0	513.0	0.06143	0.999259	6364665	5975374	1.00	0.93857	6366463	0.0112	706	-2165.6587	243.1573	6388832

2 rows