work/3574108931_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108931_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108931_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108931_sv1	33370548	49082	0.001471	26174237	0.215649	13058314	0.760422	0.237703	0.877211	0.122789	214	317	469	12716830	0.973849	11155345	1561485	19903471	6221684	347.918867	120.646591	7196311	0.978827	0.944421	0.944421	4998219900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206665	0.083247	0.0	0.118721	0.125743	0.228397	0.353753	0.843445	1.18141	0.986307	0.901862	1.008577	1.021972	0.994481	1.140471	1.073749	0.928509	0.626646	0.329879	0.40299	0.0	0.0	0.0	279.353604	0.351922	1627.0	65.0	102.0	276.0	483.0	553.0	0.04606	0.998644	6365695	6073223	1.00	0.95394	6366463	0.0113	723	-2410.6649	258.2353	6388832

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