work/3574108932_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108932_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108932_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108932_sv1	36871390	56269	0.001526	28294589	0.232614	14114705	0.754954	0.243057	0.875829	0.124171	215	322	480	13705433	0.971004	12003612	1701821	21361109	6877211	353.282501	125.164574	8576801	0.977983	0.942507	0.942507	5522268150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209403	0.148674	0.0	0.14695	0.186961	0.255297	0.370726	0.868965	1.2103	1.016763	0.902082	1.00045	0.998285	0.962849	1.102913	1.031263	0.904459	0.603799	0.290699	0.343027	0.0	0.0	0.0	299.31592	0.311766	1421.0	86.0	122.0	302.0	490.0	561.0	0.020113	0.998354	6345892	6238413	1.00	0.979887	6366463	0.0094	665	-1867.7556	173.8348	6388832

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