work/3574108934_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108934_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108934_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108934_sv1	32638346	42677	0.001308	25566162	0.216683	12758165	0.758542	0.239789	0.874837	0.125163	210	318	476	12449429	0.975801	10891224	1558205	19392996	6130489	349.354814	125.63533	7072184	0.978572	0.944262	0.944262	4889350350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	189114	0.182062	0.0	0.154608	0.221853	0.263841	0.38133	0.870651	1.210385	1.027598	0.909215	1.002358	0.990134	0.952798	1.093313	1.01163	0.892732	0.586287	0.280043	0.341005	0.0	0.0	0.0	269.984773	0.309453	1305.0	78.0	111.0	271.0	441.0	502.0	0.031207	0.998934	6346505	6167787	1.00	0.968793	6366463	0.0131	644	-2238.1433	263.4441	6388832

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