work/3574108936_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108936_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108936_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108936_sv1	32312178	45116	0.001396	24973111	0.22713	12459834	0.75231	0.245883	0.879208	0.120792	232	334	488	12119609	0.972694	10655660	1463949	18787532	6140463	365.303581	122.323036	7339067	0.97826	0.942863	0.942863	4840059300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186837	0.168883	0.0	0.188408	0.211461	0.274639	0.381576	0.875873	1.212192	1.02136	0.904177	0.999836	0.9912	0.957414	1.098493	1.025408	0.899966	0.594498	0.295093	0.38072	0.0	0.0	0.0	267.714656	0.317474	1442.0	74.0	106.0	270.0	440.0	502.0	0.038801	0.999184	6345772	6119436	1.00	0.961199	6366463	0.013	514	-1880.0291	210.0844	6388832

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