work/3574108937_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108937_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108937_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108937_sv1	37649228	53032	0.001409	28279438	0.248871	14108941	0.755647	0.242478	0.87603	0.12397	215	322	480	13717529	0.972258	12016961	1700568	21369273	6857133	353.509886	125.393089	9369790	0.978552	0.943867	0.943867	5639429400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	210527	0.161251	0.0	0.178934	0.213749	0.272053	0.37425	0.876154	1.209519	1.022889	0.901414	0.998366	0.989922	0.961476	1.104645	1.02602	0.900824	0.59834	0.292789	0.346921	0.0	0.0	0.0	298.797479	0.312954	1831.0	86.0	122.0	301.0	489.0	563.0	0.019992	0.998048	6346734	6239186	1.00	0.980008	6366463	0.0055	602	-1432.7546	68.9105	6388832

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