work/3574108938_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108938_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108938_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108938_sv1	33058800	47976	0.001451	26002117	0.213459	12972945	0.759934	0.23822	0.874172	0.125828	210	316	470	12679298	0.977365	11083886	1595412	19759904	6194237	346.88486	123.206543	7056683	0.979378	0.945813	0.945813	4951623600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205193	0.068248	0.0	0.104775	0.112391	0.213598	0.35443	0.843693	1.186517	0.992511	0.905201	1.009747	1.016501	0.987983	1.129882	1.06348	0.930503	0.616577	0.30389	0.388341	0.0	0.0	0.0	275.849848	0.350489	1698.0	65.0	101.0	273.0	474.0	540.0	0.047607	0.998962	6363740	6063372	1.00	0.952393	6366463	0.0075	686	-1734.5407	120.1617	6388832

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