work/3574108939_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108939_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108939_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108939_sv1	35552276	50241	0.001413	27685600	0.221271	13813418	0.756334	0.241851	0.873793	0.126207	219	321	472	13480736	0.975916	11779374	1701362	20939567	6695792	351.780479	120.324928	7866676	0.978837	0.944763	0.944763	5325305250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205355	0.156353	0.0	0.145185	0.206317	0.257343	0.386333	0.888216	1.21708	1.021637	0.899679	0.996885	0.986702	0.951351	1.100488	1.033581	0.921672	0.603346	0.289604	0.355591	0.0	0.0	0.0	295.286167	0.311566	1854.0	85.0	120.0	298.0	483.0	549.0	0.021148	0.998938	6346973	6231823	1.00	0.978852	6366463	0.0111	633	-2107.085	208.853	6388832

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