work/3574108940_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108940_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108940_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108940_sv1	35737078	50734	0.00142	27889475	0.219593	13915246	0.759076	0.239105	0.875092	0.124908	216	319	471	13591222	0.976714	11893566	1697656	21170225	6668516	349.62815	120.637245	7847603	0.979357	0.945565	0.945565	5352951600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	221085	0.073847	0.0	0.126026	0.125176	0.229446	0.360577	0.845661	1.189247	0.990855	0.90409	1.003761	1.013557	0.988407	1.134456	1.072587	0.944445	0.635451	0.332279	0.359063	0.0	0.0	0.0	297.608491	0.351509	1360.0	69.0	109.0	294.0	513.0	586.0	0.037276	0.998581	6365723	6129146	1.00	0.962724	6366463	0.004	644	-1222.748	50.9744	6388832

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