work/3574108941_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108941_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108941_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108941_sv1	42622068	63076	0.00148	31948628	0.250421	15938138	0.75537	0.242656	0.875351	0.124649	214	320	476	15470893	0.970684	13542455	1928438	24133021	7752531	350.973244	123.623184	10673440	0.978172	0.943133	0.943133	6383848800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	235420	0.148532	0.0	0.144087	0.206856	0.264143	0.387364	0.89596	1.227702	1.025748	0.900843	0.992069	0.983451	0.949871	1.087651	1.016066	0.890862	0.599088	0.286904	0.331882	0.0	0.0	0.0	337.959365	0.307475	1796.0	98.0	139.0	342.0	545.0	621.0	0.010624	0.997526	6345374	6298828	1.00	0.989376	6366463	0.0025	568	-1013.5907	19.9621	6388832

2 rows