work/3574108943_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108943_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108943_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108943_sv1	33074866	44220	0.001337	25140655	0.239886	12544111	0.752587	0.245654	0.875282	0.124718	215	324	483	12153176	0.968835	10637462	1515714	18920525	6175910	354.591563	126.365135	7934211	0.97818	0.943042	0.943042	4954596900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185295	0.185405	0.0	0.18206	0.228044	0.28624	0.377101	0.868585	1.200288	1.02058	0.907284	1.005754	1.000382	0.963099	1.095956	1.022104	0.880606	0.592553	0.283023	0.372722	0.0	0.0	0.0	264.751773	0.311565	1630.0	76.0	108.0	266.0	434.0	493.0	0.035267	0.999341	6347020	6141937	1.00	0.964733	6366463	0.0156	674	-2542.4797	355.4788	6388832

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