work/3574109522_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109522_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109522_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109522_sv1	30215514	56953	0.001885	23890380	0.209334	11911865	0.760892	0.236724	0.873843	0.126157	202	308	467	11574261	0.971658	10114086	1460175	18178009	5655418	340.897103	124.65271	6325134	0.976495	0.939329	0.939329	4523784150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	178295	0.152539	0.0	0.135533	0.201219	0.262767	0.362865	0.843494	1.176098	1.00107	0.898102	0.997453	1.007307	0.987278	1.150801	1.100629	0.985927	0.668779	0.328343	0.371042	0.0	0.0	0.0	250.318944	0.312658	1329.0	71.0	102.0	251.0	415.0	475.0	0.045197	0.999686	6346904	6078720	1.00	0.954803	6366463	0.007	702	-1541.6899	100.377	6388832

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