work/3574109529_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109529_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109529_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109529_sv1	35362144	59329	0.001678	27799465	0.213864	13865065	0.767078	0.230788	0.872934	0.127066	208	303	446	13561201	0.978084	11838038	1723163	21324352	6415784	332.735931	114.157875	7562679	0.978281	0.943997	0.943997	5295422250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	208103	0.179955	0.0	0.161647	0.204308	0.253539	0.382049	0.886763	1.222221	1.027703	0.905778	0.991548	0.972614	0.940772	1.098475	1.05105	0.959445	0.645944	0.308239	0.321507	0.0	0.0	0.0	298.02401	0.305428	1332.0	87.0	124.0	302.0	481.0	547.0	0.018464	0.998256	6346394	6248913	1.00	0.981536	6366463	0.0054	710	-1507.7146	73.5206	6388832

2 rows