work/3574109530_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109530_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109530_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109530_sv1	40692682	70669	0.001737	31288541	0.231102	15603785	0.758875	0.238867	0.86952	0.13048	206	307	456	15171794	0.972315	13192182	1979612	23744078	7473794	337.80321	118.967705	9404141	0.977292	0.941462	0.941462	6093301950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	233153	0.156237	0.0	0.152748	0.201716	0.256362	0.378707	0.882361	1.203521	1.012528	0.897371	0.995208	0.991464	0.96059	1.117317	1.068678	0.973756	0.658578	0.315023	0.359773	0.0	0.0	0.0	330.854812	0.30617	2019.0	96.0	137.0	335.0	537.0	612.0	0.011546	0.998367	6346917	6292954	1.00	0.988454	6366463	0.0166	724	-3414.0396	545.602	6388832

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