work/3574109533_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109533_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109533_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109533_sv1	34851778	63905	0.001834	27817384	0.201837	13871518	0.747197	0.250506	0.863561	0.136439	218	318	471	13488203	0.972367	11647882	1840321	20785058	6968421	350.196962	120.779854	7034394	0.976681	0.939496	0.939496	5218180950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	220978	0.089522	0.0	0.109971	0.128078	0.229254	0.357089	0.843055	1.175605	0.988834	0.907017	1.011448	1.020967	0.991502	1.134916	1.073666	0.936957	0.634317	0.326148	0.381718	0.0	0.0	0.0	293.56435	0.354926	1337.0	67.0	105.0	291.0	506.0	575.0	0.041756	0.999079	6365614	6100628	1.00	0.958244	6366463	0.0084	641	-1793.7108	144.2027	6388832

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