work/3574109537_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109537_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109537_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109537_sv1	26080778	48789	0.001871	20998256	0.194876	10470076	0.781011	0.216665	0.872726	0.127274	186	278	414	10259581	0.979896	8953802	1305779	16399873	4549594	307.521274	109.875717	5082522	0.978723	0.945873	0.945873	3904798350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	157630	0.162399	0.0	0.152881	0.192005	0.246546	0.37652	0.873293	1.200834	1.014738	0.898584	0.988226	0.980684	0.958017	1.133395	1.096455	1.035667	0.704723	0.351141	0.390233	0.0	0.0	0.0	221.900024	0.302386	932.0	66.0	94.0	223.0	362.0	417.0	0.062164	0.999667	6346035	5970699	1.00	0.937836	6366463	0.006	617	-1069.969	55.5864	6388832

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