work/3574109538_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109538_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109538_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109538_sv1	35172110	61055	0.001736	27760293	0.21073	13844509	0.761893	0.235908	0.875628	0.124372	219	315	458	13486226	0.974121	11808911	1677315	21150361	6548877	344.646681	114.317429	7411817	0.97765	0.942415	0.942415	5266658250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	208258	0.172548	0.0	0.161819	0.213604	0.259676	0.371368	0.857164	1.190691	1.015327	0.902319	1.00141	0.992419	0.96499	1.126612	1.075691	0.980723	0.655916	0.330408	0.366552	0.0	0.0	0.0	300.038938	0.315482	1897.0	84.0	120.0	302.0	496.0	569.0	0.021744	0.998688	6347034	6228032	1.00	0.978256	6366463	0.0132	576	-2097.5605	268.4874	6388832

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