work/3574109540_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109540_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109540_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109540_sv1	35240284	59434	0.001687	28727853	0.184801	14329130	0.767748	0.230183	0.862979	0.137021	197	288	423	14052998	0.980729	12127439	1925559	22055745	6612674	316.807055	108.70311	6512431	0.978488	0.945385	0.945385	5277127500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230207	0.082121	0.0	0.096186	0.098978	0.202592	0.330134	0.804155	1.16252	0.98702	0.912847	1.017159	1.025619	0.995484	1.15114	1.097413	0.99483	0.662227	0.341446	0.346631	0.0	0.0	0.0	305.579785	0.348299	1342.0	72.0	113.0	302.0	525.0	597.0	0.034084	0.998747	6364157	6149469	1.00	0.965916	6366463	0.0099	529	-1738.9659	178.4759	6388832

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