work/3574109545_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109545_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109545_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109545_sv1	25224174	56434	0.002237	20029694	0.205933	9981979	0.748316	0.248867	0.85915	0.14085	199	305	463	9705002	0.972252	8338057	1366945	14988539	4984721	337.017794	124.931602	5194480	0.976651	0.940235	0.940235	3775161000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	151509	0.148893	0.0	0.134259	0.186386	0.255501	0.349944	0.835163	1.176476	1.010413	0.904541	1.008401	1.010416	0.978388	1.132093	1.072191	0.955593	0.640472	0.303241	0.323239	0.0	0.0	0.0	206.223843	0.308392	1376.0	58.0	85.0	207.0	338.0	385.0	0.089267	0.999902	6345086	5798149	1.00	0.910733	6366463	0.0098	679	-1401.5629	128.8443	6388832

2 rows