work/3574109550_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109550_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109550_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109550_sv1	33368158	60944	0.001826	27216856	0.184346	13572632	0.753415	0.244346	0.859746	0.140254	197	300	453	13214388	0.973605	11361021	1853367	20505581	6650331	332.372031	121.189995	6151302	0.976849	0.940487	0.940487	4996082100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	204064	0.140843	0.0	0.153777	0.19118	0.2441	0.349346	0.828612	1.1671	1.003953	0.904832	1.010688	1.013352	0.985146	1.142445	1.083106	0.986697	0.659397	0.328496	0.325758	0.0	0.0	0.0	282.657692	0.309239	1535.0	81.0	116.0	284.0	465.0	532.0	0.025133	0.998828	6346319	6206454	1.00	0.974867	6366463	0.0139	640	-2224.1635	294.8868	6388832

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