work/3574109552_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109552_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109552_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109552_sv1	25928944	49403	0.001905	20029646	0.227518	9985472	0.7487	0.248833	0.872062	0.127938	227	328	480	9686746	0.970084	8447446	1239300	14996200	4984043	358.656487	120.633392	5899298	0.976851	0.939698	0.939698	3881931150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	148696	0.140909	0.0	0.163989	0.221081	0.27031	0.370928	0.874995	1.210739	1.018347	0.901223	0.996574	0.990918	0.960244	1.104796	1.045526	0.930796	0.628331	0.332837	0.417868	0.0	0.0	0.0	212.320718	0.317197	1406.0	58.0	83.0	214.0	349.0	398.0	0.092718	0.999802	6346340	5776176	1.00	0.907282	6366463	0.0097	712	-1565.7117	145.404	6388832

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