work/3574109553_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109553_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109553_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109553_sv1	22885568	61486	0.002687	18225909	0.203607	9077285	0.7572	0.239426	0.873252	0.126748	207	312	468	8803681	0.969858	7687832	1115849	13800663	4363760	342.958416	122.578514	4659659	0.975336	0.935402	0.935402	3423612300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	136291	0.147593	0.0	0.157248	0.179318	0.252885	0.356209	0.841877	1.178179	1.001652	0.900726	1.0055	1.007324	0.984555	1.14054	1.089259	0.975279	0.650258	0.305827	0.339326	0.0	0.0	0.0	192.129712	0.314435	1202.0	53.0	77.0	193.0	319.0	364.0	0.117481	0.999937	6346192	5618527	1.00	0.882519	6366463	0.0065	694	-1129.7446	68.2593	6388832

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