work/3574109558_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109558_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109558_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109558_sv1	40334194	69628	0.001726	32289336	0.199455	16104715	0.760509	0.237334	0.860612	0.139388	205	297	433	15769465	0.979183	13571394	2198071	24556340	7663368	326.406927	110.261978	8044858	0.97798	0.943614	0.943614	6039684900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	260820	0.096739	0.0	0.122405	0.126596	0.216768	0.353192	0.831342	1.170317	0.982777	0.90042	1.007395	1.016531	0.996977	1.15858	1.119083	1.007722	0.683462	0.353338	0.385378	0.0	0.0	0.0	343.831384	0.352148	1891.0	79.0	126.0	340.0	597.0	682.0	0.024371	0.993104	6364501	6211306	1.00	0.975629	6366463	0.0108	643	-2435.4689	247.5551	6388832

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