work/3574109559_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109559_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109559_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109559_sv1	44937666	77118	0.001716	36335635	0.191421	18124037	0.767377	0.2305	0.859612	0.140388	191	282	416	17752072	0.979477	15259896	2492176	27883136	8375381	311.167943	109.378418	8602031	0.978084	0.944484	0.944484	6729082200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	293439	0.071395	0.0	0.102851	0.10973	0.198696	0.343667	0.815842	1.148559	0.970803	0.897111	1.011158	1.027925	1.012301	1.185781	1.145753	1.053003	0.72418	0.376263	0.390198	0.0	0.0	0.0	382.450509	0.349515	2121.0	90.0	142.0	379.0	665.0	764.0	0.01545	0.96916	6364626	6268104	1.00	0.98455	6366463	0.0138	644	-3152.5439	426.5154	6388832

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