work/3574109560_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109560_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109560_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109560_sv1	37490432	56916	0.001518	29939215	0.201417	14936532	0.773315	0.224784	0.874956	0.125044	193	293	440	14575238	0.975811	12752687	1822551	23152446	6729853	323.291944	117.6539	7551217	0.978024	0.943926	0.943926	5615027400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	223684	0.189489	0.0	0.164773	0.231949	0.258115	0.372732	0.856807	1.188912	1.013526	0.901119	0.998863	0.993749	0.967471	1.127051	1.085408	1.002047	0.677289	0.341432	0.357557	0.0	0.0	0.0	316.58351	0.305877	1895.0	93.0	133.0	318.0	518.0	594.0	0.013523	0.998437	6347089	6280367	1.00	0.986477	6366463	0.0158	579	-2516.2269	369.9106	6388832

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