work/3574109564_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109564_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109564_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109564_sv1	30518708	49981	0.001638	24656852	0.192074	12298501	0.762175	0.235798	0.864586	0.135414	199	296	440	12013212	0.976803	10386459	1626753	18792844	5814027	326.761949	115.445503	5861856	0.977704	0.942833	0.942833	4570309050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	187817	0.128153	0.0	0.15244	0.192866	0.244412	0.354715	0.836707	1.177799	1.00842	0.902677	1.005335	1.002034	0.973967	1.141255	1.094219	1.01033	0.683569	0.340315	0.390661	0.0	0.0	0.0	259.305912	0.310514	1311.0	74.0	107.0	259.0	427.0	488.0	0.037375	0.998997	6344877	6128518	1.00	0.962625	6366463	0.007	676	-1541.9894	87.8035	6388832

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