work/3574109566_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109566_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109566_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109566_sv1	32281414	51894	0.001608	25366473	0.214208	12652498	0.761837	0.236117	0.874252	0.125748	212	311	459	12309427	0.972885	10761538	1547889	19325118	5989461	341.392673	118.109749	6914941	0.977749	0.942524	0.942524	4834428000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	188506	0.182167	0.0	0.15726	0.203919	0.250053	0.364655	0.858698	1.199016	1.023283	0.908202	1.000209	0.993535	0.956849	1.109776	1.049426	0.946181	0.630312	0.309915	0.339916	0.0	0.0	0.0	271.500416	0.313513	1228.0	76.0	109.0	273.0	445.0	509.0	0.033445	0.998857	6346321	6153535	1.00	0.966555	6366463	0.0081	704	-1738.2442	135.633	6388832

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