work/3574109568_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574109568_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109568_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574109568_sv1	38353788	59961	0.001563	31445707	0.180115	15688043	0.761864	0.23623	0.86009	0.13991	191	289	437	15342003	0.977942	13195506	2146497	23957340	7428406	321.499302	118.020035	6908081	0.977407	0.942242	0.942242	5744074050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	240133	0.172459	0.0	0.169564	0.217856	0.249158	0.360788	0.829773	1.163305	0.999527	0.899568	1.005514	1.008233	0.984531	1.158805	1.121613	1.042167	0.71242	0.337474	0.354017	0.0	0.0	0.0	328.095031	0.309731	1398.0	95.0	136.0	327.0	544.0	626.0	0.0122	0.997165	6346544	6288791	1.00	0.9878	6366463	0.0125	695	-2452.7933	304.4558	6388832

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