work/3574154986_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574154986_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154986_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574154986_sv1	29130910	43978	0.00151	23504414	0.193145	11725915	0.76481	0.233319	0.868655	0.131345	210	301	437	11473180	0.978446	9966240	1506940	17976412	5484024	329.367626	109.462257	5626496	0.979927	0.947527	0.947527	4363039800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	177152	0.153376	0.0	0.160522	0.186064	0.246088	0.371963	0.868694	1.209312	1.016799	0.898181	0.994937	0.986934	0.953295	1.119254	1.075851	0.994439	0.675023	0.331882	0.365023	0.0	0.0	0.0	253.340934	0.306947	1106.0	73.0	104.0	256.0	410.0	466.0	0.041386	0.999318	6346352	6102982	1.00	0.958614	6366463	0.009	686	-1648.4338	151.2384	6388832

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