work/3574154991_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574154991_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154991_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574154991_sv1	39494610	59337	0.001502	30409450	0.230035	15170684	0.762044	0.236004	0.865345	0.134655	197	299	450	14841618	0.978309	12843113	1998505	23173352	7176761	330.008791	120.323242	9085160	0.978981	0.945514	0.945514	5915290950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230140	0.158486	0.0	0.152391	0.200437	0.23547	0.369931	0.872726	1.209003	1.017287	0.899711	0.996666	0.988802	0.957235	1.111078	1.064791	0.966538	0.649269	0.325565	0.367363	0.0	0.0	0.0	318.749931	0.304781	2235.0	93.0	133.0	322.0	517.0	588.0	0.013394	0.998152	6346606	6281193	1.00	0.986606	6366463	0.0106	636	-2215.7397	241.595	6388832

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