work/3574154992_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574154992_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154992_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574154992_sv1	42270294	65962	0.00156	33752424	0.20151	16838728	0.780993	0.217053	0.871877	0.128123	188	279	414	16540286	0.982276	14421102	2119184	26360408	7326054	308.42682	108.863373	8517870	0.979694	0.948086	0.948086	6330649800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	255588	0.156449	0.0	0.150432	0.187461	0.229158	0.365766	0.874252	1.209142	1.022388	0.902848	0.995547	0.980737	0.947654	1.113219	1.07016	1.000117	0.664401	0.315155	0.39714	0.0	0.0	0.0	360.122645	0.297015	2442.0	108.0	155.0	365.0	578.0	654.0	0.007126	0.996536	6345727	6321096	1.00	0.992874	6366463	0.0103	686	-2725.6362	264.8025	6388832

2 rows