work/3574154995_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574154995_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154995_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574154995_sv1	33347830	47941	0.001438	26327907	0.210506	13135970	0.782226	0.215953	0.872926	0.127074	183	274	411	12896395	0.981762	11257594	1638801	20594375	5685591	305.744768	110.823387	7019923	0.979847	0.948489	0.948489	4994983350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200031	0.177638	0.0	0.144567	0.196972	0.235326	0.364969	0.855818	1.186764	1.012661	0.900997	0.997439	0.991538	0.965144	1.135334	1.098557	1.037126	0.693777	0.329359	0.415748	0.0	0.0	0.0	277.338834	0.294219	1457.0	86.0	122.0	278.0	448.0	514.0	0.019458	0.999109	6345874	6242584	1.00	0.980542	6366463	0.0041	579	-1015.7913	37.9957	6388832

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