work/3574155016_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155016_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155016_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155016_sv1	39706996	55309	0.001393	32361815	0.184985	16149060	0.781844	0.216447	0.865987	0.134013	176	265	401	15852437	0.981632	13728001	2124436	25301895	7004611	297.00033	109.799721	7345181	0.980085	0.949215	0.949215	5947753050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	244294	0.162397	0.0	0.150514	0.185613	0.233984	0.363579	0.850004	1.183832	1.015812	0.904819	1.002661	0.994201	0.959155	1.127528	1.094496	1.043882	0.701176	0.333733	0.351727	0.0	0.0	0.0	339.438996	0.295213	1701.0	103.0	148.0	341.0	548.0	627.0	0.008541	0.99765	6346045	6312085	1.00	0.991459	6366463	0.003	580	-1073.6243	27.6662	6388832

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