work/3574155017_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155017_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155017_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155017_sv1	37694912	56927	0.00151	30691857	0.185783	15313139	0.784878	0.213267	0.868482	0.131518	183	268	393	15033091	0.981712	13055966	1977125	24089371	6545559	296.230239	102.788857	7003055	0.980536	0.950274	0.950274	5645697750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	248326	0.08632	0.0	0.10956	0.119009	0.198298	0.337345	0.819914	1.154347	0.976344	0.898715	1.007327	1.020558	1.003249	1.178688	1.154835	1.079726	0.745733	0.385595	0.393421	0.0	0.0	0.0	326.887197	0.342271	1753.0	80.0	124.0	324.0	562.0	647.0	0.025073	0.996291	6365191	6206834	1.00	0.974927	6366463	0.0094	679	-2198.0332	218.9926	6388832

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