work/3574155020_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574155020_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155020_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574155020_sv1	32681908	43837	0.001341	25835509	0.209486	12891872	0.765131	0.233172	0.866281	0.133719	197	294	441	12593518	0.976857	10909526	1683992	19767546	6024126	325.923168	116.671043	6846399	0.97952	0.946839	0.946839	4895710650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205508	0.072382	0.0	0.106873	0.116738	0.223632	0.343149	0.829763	1.17315	0.988014	0.905523	1.013489	1.020944	0.992471	1.140023	1.091591	0.97427	0.65888	0.356845	0.460526	0.0	0.0	0.0	273.670462	0.349781	1278.0	64.0	100.0	271.0	472.0	538.0	0.048582	0.998951	6364795	6057167	1.00	0.951418	6366463	0.0092	677	-1981.0637	187.0857	6388832

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